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rm(list = ls())

suppressMessages(library(plotly))
library(ggplot2)

data_path <- file.path("..", "data", "processed", "all_estimates.csv")
all_est_df <- readr::read_csv(data_path, col_names = T, show_col_types = FALSE)

fig <- plot_ly(
  all_est_df[all_est_df$parameter != "deviance", ], 
  x = ~var, y = ~mean, 
  text = ~paste('Subject: ', sub),
  color = ~parameter,
  type = "box",
  boxpoints = "all", jitter = 0.3
  ) 
  # + facet_wrap( ~ var, ncol=2)
fig <- fig %>% layout(boxmode = "group")

fig

Warning: 'layout' objects don't have these attributes: 'boxmode'
Valid attributes include:
'_deprecated', 'activeshape', 'annotations', 'autosize', 'autotypenumbers', 'calendar', 'clickmode', 'coloraxis', 'colorscale', 'colorway', 'computed', 'datarevision', 'dragmode', 'editrevision', 'editType', 'font', 'geo', 'grid', 'height', 'hidesources', 'hoverdistance', 'hoverlabel', 'hovermode', 'images', 'legend', 'mapbox', 'margin', 'meta', 'metasrc', 'modebar', 'newshape', 'paper_bgcolor', 'plot_bgcolor', 'polar', 'scene', 'selectdirection', 'selectionrevision', 'separators', 'shapes', 'showlegend', 'sliders', 'spikedistance', 'template', 'ternary', 'title', 'transition', 'uirevision', 'uniformtext', 'updatemenus', 'width', 'xaxis', 'yaxis', 'barmode', 'bargap', 'mapType'

Warning: 'layout' objects don't have these attributes: 'boxmode'
Valid attributes include:
'_deprecated', 'activeshape', 'annotations', 'autosize', 'autotypenumbers', 'calendar', 'clickmode', 'coloraxis', 'colorscale', 'colorway', 'computed', 'datarevision', 'dragmode', 'editrevision', 'editType', 'font', 'geo', 'grid', 'height', 'hidesources', 'hoverdistance', 'hoverlabel', 'hovermode', 'images', 'legend', 'mapbox', 'margin', 'meta', 'metasrc', 'modebar', 'newshape', 'paper_bgcolor', 'plot_bgcolor', 'polar', 'scene', 'selectdirection', 'selectionrevision', 'separators', 'shapes', 'showlegend', 'sliders', 'spikedistance', 'template', 'ternary', 'title', 'transition', 'uirevision', 'uniformtext', 'updatemenus', 'width', 'xaxis', 'yaxis', 'barmode', 'bargap', 'mapType'

gait_parameter_list <- list(
  "stride_lengths_avg",
  "stride_times_avg",
  "cadence_avg",
  "speed_avg"
)

for (gait_parameter in gait_parameter_list) {
  plot_est_df <- all_est_df[(all_est_df$var == gait_parameter) & (all_est_df$parameter != "deviance"), ]
  # means <- aggregate(mean ~  var, plot_est_df, mean)
  fun_mean <- function(x){
  return(data.frame(y=mean(x),label=round(mean(x,na.rm=T), digits = 4)))}
  
  p <- ggplot(
  data = plot_est_df, 
  aes(x=parameter, y=mean)) + 
  geom_boxplot() +
  stat_summary(fun.y = mean, geom="point",color="darkred", size=3) +
  stat_summary(fun.data = fun_mean, geom="text", vjust=-0.7) +
  geom_point(aes(y=mean, group=gait_parameter), position = position_dodge(width=0.75)) + 
  guides(fill=guide_legend(title="Likelihood Model")) + 
  ggtitle(paste0(gait_parameter, " estimation from all 16 subjects"))
  p + facet_wrap( ~ parameter, scales="free")
  
  print(p)
}

Warning: `fun.y` is deprecated. Use `fun` instead.
Warning: `fun.y` is deprecated. Use `fun` instead.
Warning: `fun.y` is deprecated. Use `fun` instead.
Warning: `fun.y` is deprecated. Use `fun` instead.

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